Subtomogram tutorial¶

  • Introduction
  • Preprocessing
    • Getting organised
  • Import tomograms
  • Import coordinates
  • Make pseudo-subtomograms
    • Running the job
  • De novo 3D model generation
    • Running the job
    • Analysing the results
  • Initial 3D refinement
    • Running the auto-refine job
    • Analysing the results
  • Reconstruct particle
    • Running the job
    • Analysing the results
  • High-resolution 3D refinement
    • Pseudo-subtomograms at bin 2
    • Running the auto-refine job at bin 2
    • Pseudo-subtomograms and reference map at bin 1
    • Running the auto-refine job at bin 1
  • Masks & Postprocessing
    • Masks
    • Post-processing
  • 3D classification
  • Tomo CTF refinement
    • Reference map at bin 1 and FSC data
    • Running the job
    • Analysing the results
  • Tomo frame alignment
    • Running the job
    • Analysing the results
    • Tomo refinement cycle

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Navigation

  • What’s new?
  • The team
  • Installation
  • Single particle tutorial
  • Subtomogram tutorial
    • Introduction
    • Preprocessing
    • Import tomograms
    • Import coordinates
    • Make pseudo-subtomograms
    • De novo 3D model generation
    • Initial 3D refinement
    • Reconstruct particle
    • High-resolution 3D refinement
    • Masks & Postprocessing
    • 3D classification
    • Tomo CTF refinement
    • Tomo frame alignment
  • On-the-fly processing
  • Reference pages

  • Source repository of this documentation

Related Topics

  • Documentation overview
    • Previous: Wrapping up
    • Next: Introduction

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